Teaching Chemistry

Under Linux/Unix

   

Links

ChemCalc Unix
ChemCalc is intended to be a calculator oriented towards chemistry. What is being implemented at this point is a set of prompts to take information from the user to calculate certain values dependent on the particular scientific law you specify.

chemtutor HTML
Basic chemistry help is available here for high school or college students. Chemtutor begins with the fundamentals and gives expert help with the most difficult phases of understanding your first course in chemistry. Chemtutor is not necessarily a complete text for your course or a complete outline, but we are proud to offer some insightful help in the parts of primary chemistry that have been, from our experience, the hardest for students to grasp.

ChiralityMeasure Unix
QCM: Qantitative Chirality Measure of a conformer

DomainFinder Source, MacOS, Linux
An interactive program for the determination and characterization of dynamical domains in proteins.

GPeriodic Linux
It allows you to browse through a periodic table of the elements and view detailnts, and view detailed information on each of the elements on each of the elements. 118 elements are currently listed.

hingefind Source
A novel algorithm to investigate domain motions in proteins.

KMol X11
KMol calculates elemental compositon and molecular weight of compounds from their chemical formula. KMol supports user defined groups and elements, unlimited nesting of subgroups, multicomponent compounds, global and per-user symbol definitions. It runs under Linux, and is designed to be used with the KDE.

NAB Source (Linux, Unix, Windows 9x/NT)
Nucleic Acid Builder. Generation of Models for "Unusual" DNA and RNA: A Computer Language for Structural Exploration.

Naccess Unix, Linux
Naccess is a stand alone program that calculates the accessible area of a molecule from a PDB (Protein Data Bank) format file. It can calculate the atomic and residue accessiblities for both proteins and nucleic acids.

POLYRATE Source
A computer program for the calculation of chemical reaction rates of polyatomic species (and also atoms and diatoms as special cases).

steric Linux, IRIX, Source
A Program to Calculate the Steric Size of Molecules about a Point in terms of their Cone Angles and Solid Angles, as well as their total Volumes and Projected Areas

unimol Source | Source and Manual
Theory of Unimolecular and Recombination Reactions

XNBC Unix, Windows
XNBC is a full featured application for computer naive neuroscientists. It simulates biological neural networks using graphic tools to edit neurons and networks, to run the simulation and to analyze results.